J3_6OGF_034
3D structure
- PDB id
- 6OGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 6OGF|1|3|U|1212, 6OGF|1|3|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OGF_034 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.2755
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OGF|1|3|C|990
6OGF|1|3|U|991
6OGF|1|3|U|992
6OGF|1|3|G|993
6OGF|1|3|A|994
6OGF|1|3|C|995
6OGF|1|3|A|996
6OGF|1|3|U|997
*
6OGF|1|3|A|1044
6OGF|1|3|C|1045
6OGF|1|3|A|1046
6OGF|1|3|G|1047
*
6OGF|1|3|C|1210
6OGF|1|3|U|1211
6OGF|1|3|U|1212
6OGF|1|3|A|1213
6OGF|1|3|C|1214
6OGF|1|3|G|1215
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 8
- Peptide chain release factor 2
- Chain S
- 30S ribosomal protein S14
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