3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGG*CUAG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OJ2_002 not in the Motif Atlas
Geometric match to J3_5J7L_002
Geometric discrepancy: 0.12
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6OJ2|1|QA|C|586
6OJ2|1|QA|G|587
6OJ2|1|QA|G|588
*
6OJ2|1|QA|C|651
6OJ2|1|QA|U|652
6OJ2|1|QA|A|653
6OJ2|1|QA|G|654
*
6OJ2|1|QA|C|754
6OJ2|1|QA|G|755

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QH
30S ribosomal protein S8
Chain QL
30S ribosomal protein S12
Chain QO
30S ribosomal protein S15
Chain QQ
30S ribosomal protein S17

Coloring options:


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