J3_6OJ2_018

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_018 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0865

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6OJ2|1|RA|C|698
6OJ2|1|RA|A|699
6OJ2|1|RA|G|700
*
6OJ2|1|RA|C|732
6OJ2|1|RA|G|733
6OJ2|1|RA|A|734
6OJ2|1|RA|A|735
6OJ2|1|RA|C|736
*
6OJ2|1|RA|G|760
6OJ2|1|RA|A|761
6OJ2|1|RA|U|762
6OJ2|1|RA|G|763

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2