J3_6OJ2_021

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6OJ2|1|RA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_021 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1049

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6OJ2|1|RA|C|1306
6OJ2|1|RA|A|1307
6OJ2|1|RA|A|1308
6OJ2|1|RA|G|1309
*
6OJ2|1|RA|C|1605
6OJ2|1|RA|G|1606
6OJ2|1|RA|C|1607
6OJ2|1|RA|A|1608
6OJ2|1|RA|A|1609
6OJ2|1|RA|A|1610
6OJ2|1|RA|C|1611
*
6OJ2|1|RA|G|1620
6OJ2|1|RA|U|1621
6OJ2|1|RA|G|1622

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34