J3_6OJ2_039

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

6OJ2|1|XA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_039 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1288

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OJ2|1|XA|U|1073
6OJ2|1|XA|G|1074
*
6OJ2|1|XA|U|1083
6OJ2|1|XA|G|1084
6OJ2|1|XA|U|1085
6OJ2|1|XA|U|1086
6OJ2|1|XA|G|1087
*
6OJ2|1|XA|C|1098
6OJ2|1|XA|G|1099
6OJ2|1|XA|C|1100
6OJ2|1|XA|A|1101
6OJ2|1|XA|A|1102

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XE

30S ribosomal protein S5