3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAGCUA*UAG*CGAG
Length
14 nucleotides
Bulged bases
6OJ2|1|YA|G|686, 6OJ2|1|YA|G|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OJ2_045 not in the Motif Atlas
Homologous match to J3_7A0S_004
Geometric discrepancy: 0.0918
The information below is about J3_7A0S_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

6OJ2|1|YA|C|683
6OJ2|1|YA|G|684
6OJ2|1|YA|A|685
6OJ2|1|YA|G|686
6OJ2|1|YA|C|687
6OJ2|1|YA|U|688
6OJ2|1|YA|A|689
*
6OJ2|1|YA|U|773
6OJ2|1|YA|A|774
6OJ2|1|YA|G|775
*
6OJ2|1|YA|C|791
6OJ2|1|YA|G|792
6OJ2|1|YA|A|793
6OJ2|1|YA|G|794

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YD
50S ribosomal protein L2

Coloring options:


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