J3_6OJ2_060

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAUG*CCCAGUUCGGAUU*AUGAAGCCG

Length

27 nucleotides

Bulged bases

6OJ2|1|QA|U|1240, 6OJ2|1|QA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OJ2|1|QA|C|1237
6OJ2|1|QA|A|1238
6OJ2|1|QA|A|1239
6OJ2|1|QA|U|1240
6OJ2|1|QA|G|1241
*
6OJ2|1|QA|C|1296
6OJ2|1|QA|C|1297
6OJ2|1|QA|C|1298
6OJ2|1|QA|A|1299
6OJ2|1|QA|G|1300
6OJ2|1|QA|U|1301
6OJ2|1|QA|U|1302
6OJ2|1|QA|C|1303
6OJ2|1|QA|G|1304
6OJ2|1|QA|G|1305
6OJ2|1|QA|A|1306
6OJ2|1|QA|U|1307
6OJ2|1|QA|U|1308
*
6OJ2|1|QA|A|1329
6OJ2|1|QA|U|1330
6OJ2|1|QA|G|1331
6OJ2|1|QA|A|1332
6OJ2|1|QA|A|1333
6OJ2|1|QA|G|1334
6OJ2|1|QA|C|1335
6OJ2|1|QA|C|1336
6OJ2|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx

Chain QW

Transfer RNA; tRNA