J3_6OJ2_074
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUAG*CGC*GAGGUCAGCGGUUCGAUCCCGCUUA
- Length
- 33 nucleotides
- Bulged bases
- 6OJ2|1|XY|U|8, 6OJ2|1|XY|U|47, 6OJ2|1|XY|C|48, 6OJ2|1|XY|U|54, 6OJ2|1|XY|U|55
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OJ2|1|XY|U|6
6OJ2|1|XY|A|7
6OJ2|1|XY|U|8
6OJ2|1|XY|A|9
6OJ2|1|XY|G|10
*
6OJ2|1|XY|C|25
6OJ2|1|XY|G|26
6OJ2|1|XY|C|27
*
6OJ2|1|XY|G|43
6OJ2|1|XY|A|44
6OJ2|1|XY|G|45
6OJ2|1|XY|G|46
6OJ2|1|XY|U|47
6OJ2|1|XY|C|48
6OJ2|1|XY|A|49
6OJ2|1|XY|G|50
6OJ2|1|XY|C|51
6OJ2|1|XY|G|52
6OJ2|1|XY|G|53
6OJ2|1|XY|U|54
6OJ2|1|XY|U|55
6OJ2|1|XY|C|56
6OJ2|1|XY|G|57
6OJ2|1|XY|A|58
6OJ2|1|XY|U|59
6OJ2|1|XY|C|60
6OJ2|1|XY|C|61
6OJ2|1|XY|C|62
6OJ2|1|XY|G|63
6OJ2|1|XY|C|64
6OJ2|1|XY|U|65
6OJ2|1|XY|U|66
6OJ2|1|XY|A|67
Current chains
- Chain XY
- A-site tRNAAla(GGC)
Nearby chains
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
Coloring options: