3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
6OJ2|1|YA|A|2388, 6OJ2|1|YA|U|2390, 6OJ2|1|YA|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OJ2_079 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.1303
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6OJ2|1|YA|G|2282
6OJ2|1|YA|C|2283
6OJ2|1|YA|C|2284
*
6OJ2|1|YA|G|2384
6OJ2|1|YA|C|2385
6OJ2|1|YA|C|2386
6OJ2|1|YA|U|2387
6OJ2|1|YA|A|2388
6OJ2|1|YA|G|2389
6OJ2|1|YA|U|2390
6OJ2|1|YA|G|2391
6OJ2|1|YA|A|2392
6OJ2|1|YA|A|2393
6OJ2|1|YA|C|2394
6OJ2|1|YA|C|2395
*
6OJ2|1|YA|G|2421
6OJ2|1|YA|A|2422
6OJ2|1|YA|U|2423
6OJ2|1|YA|C|2424
6OJ2|1|YA|A|2425
6OJ2|1|YA|A|2426
6OJ2|1|YA|C|2427

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XW
Transfer RNA; tRNA
Chain Y0
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L28
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YP
50S ribosomal protein L15

Coloring options:


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