J3_6OJ2_081
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUAGCUCAGCUGGGAGAGCGCU*AGAGGUCAGC*GCUUA
- Length
- 38 nucleotides
- Bulged bases
- 6OJ2|1|QY|G|15, 6OJ2|1|QY|U|17, 6OJ2|1|QY|G|18, 6OJ2|1|QY|G|20, 6OJ2|1|QY|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OJ2|1|QY|U|6
6OJ2|1|QY|A|7
6OJ2|1|QY|U|8
6OJ2|1|QY|A|9
6OJ2|1|QY|G|10
6OJ2|1|QY|C|11
6OJ2|1|QY|U|12
6OJ2|1|QY|C|13
6OJ2|1|QY|A|14
6OJ2|1|QY|G|15
6OJ2|1|QY|C|16
6OJ2|1|QY|U|17
6OJ2|1|QY|G|18
6OJ2|1|QY|G|19
6OJ2|1|QY|G|20
6OJ2|1|QY|A|21
6OJ2|1|QY|G|22
6OJ2|1|QY|A|23
6OJ2|1|QY|G|24
6OJ2|1|QY|C|25
6OJ2|1|QY|G|26
6OJ2|1|QY|C|27
6OJ2|1|QY|U|28
*
6OJ2|1|QY|A|42
6OJ2|1|QY|G|43
6OJ2|1|QY|A|44
6OJ2|1|QY|G|45
6OJ2|1|QY|G|46
6OJ2|1|QY|U|47
6OJ2|1|QY|C|48
6OJ2|1|QY|A|49
6OJ2|1|QY|G|50
6OJ2|1|QY|C|51
*
6OJ2|1|QY|G|63
6OJ2|1|QY|C|64
6OJ2|1|QY|U|65
6OJ2|1|QY|U|66
6OJ2|1|QY|A|67
Current chains
- Chain QY
- A-site tRNAAla(GGC)
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QM
- 30S ribosomal protein S13
- Chain QS
- 30S ribosomal protein S19
- Chain QV
- Transfer RNA; tRNA
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
Coloring options: