J3_6OJ2_082
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAG*CGCUUGCAUGGCAAGCAAGAGGUCA*UU
- Length
- 31 nucleotides
- Bulged bases
- 6OJ2|1|XW|U|8, 6OJ2|1|XW|C|31, 6OJ2|1|XW|U|33, 6OJ2|1|XW|G|34, 6OJ2|1|XW|A|37, 6OJ2|1|XW|U|47, 6OJ2|1|XW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OJ2|1|XW|A|7
6OJ2|1|XW|U|8
6OJ2|1|XW|A|9
6OJ2|1|XW|G|10
*
6OJ2|1|XW|C|25
6OJ2|1|XW|G|26
6OJ2|1|XW|C|27
6OJ2|1|XW|U|28
6OJ2|1|XW|U|29
6OJ2|1|XW|G|30
6OJ2|1|XW|C|31
6OJ2|1|XW|A|32
6OJ2|1|XW|U|33
6OJ2|1|XW|G|34
6OJ2|1|XW|G|35
6OJ2|1|XW|C|36
6OJ2|1|XW|A|37
6OJ2|1|XW|A|38
6OJ2|1|XW|G|39
6OJ2|1|XW|C|40
6OJ2|1|XW|A|41
6OJ2|1|XW|A|42
6OJ2|1|XW|G|43
6OJ2|1|XW|A|44
6OJ2|1|XW|G|45
6OJ2|1|XW|G|46
6OJ2|1|XW|U|47
6OJ2|1|XW|C|48
6OJ2|1|XW|A|49
*
6OJ2|1|XW|U|65
6OJ2|1|XW|U|66
Current chains
- Chain XW
- E-site tRNAAla(GGC)
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XG
- 30S ribosomal protein S7
- Chain XK
- 30S ribosomal protein S11
- Chain XV
- Transfer RNA; tRNA
- Chain XX
- mRNA
- Chain Y6
- 50S ribosomal protein L33
Coloring options: