3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AUAG*CGCUUGCAUGGCAAGCAAGAGGUCA*UU
Length
31 nucleotides
Bulged bases
6OJ2|1|XW|U|8, 6OJ2|1|XW|C|31, 6OJ2|1|XW|U|33, 6OJ2|1|XW|G|34, 6OJ2|1|XW|A|37, 6OJ2|1|XW|U|47, 6OJ2|1|XW|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OJ2|1|XW|A|7
6OJ2|1|XW|U|8
6OJ2|1|XW|A|9
6OJ2|1|XW|G|10
*
6OJ2|1|XW|C|25
6OJ2|1|XW|G|26
6OJ2|1|XW|C|27
6OJ2|1|XW|U|28
6OJ2|1|XW|U|29
6OJ2|1|XW|G|30
6OJ2|1|XW|C|31
6OJ2|1|XW|A|32
6OJ2|1|XW|U|33
6OJ2|1|XW|G|34
6OJ2|1|XW|G|35
6OJ2|1|XW|C|36
6OJ2|1|XW|A|37
6OJ2|1|XW|A|38
6OJ2|1|XW|G|39
6OJ2|1|XW|C|40
6OJ2|1|XW|A|41
6OJ2|1|XW|A|42
6OJ2|1|XW|G|43
6OJ2|1|XW|A|44
6OJ2|1|XW|G|45
6OJ2|1|XW|G|46
6OJ2|1|XW|U|47
6OJ2|1|XW|C|48
6OJ2|1|XW|A|49
*
6OJ2|1|XW|U|65
6OJ2|1|XW|U|66

Current chains

Chain XW
E-site tRNAAla(GGC)

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XG
30S ribosomal protein S7
Chain XK
30S ribosomal protein S11
Chain XV
Transfer RNA; tRNA
Chain XX
mRNA
Chain Y6
50S ribosomal protein L33

Coloring options:

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