J3_6OKK_004
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUC*GAACAACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6OKK|1|A|C|1003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0898
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6OKK|1|A|A|950
6OKK|1|A|U|951
6OKK|1|A|U|952
6OKK|1|A|C|953
*
6OKK|1|A|G|997
6OKK|1|A|A|998
6OKK|1|A|A|999
6OKK|1|A|C|1000
6OKK|1|A|A|1001
6OKK|1|A|A|1002
6OKK|1|A|C|1003
6OKK|1|A|U|1004
6OKK|1|A|G|1005
*
6OKK|1|A|C|1012
6OKK|1|A|A|1013
6OKK|1|A|U|1014
6OKK|1|A|U|1015
6OKK|1|A|U|1016
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S3a
- Chain P
- 40S ribosomal protein S11
- Chain U
- 40S ribosomal protein S15
- Chain c
- 40S ribosomal protein S26
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