J3_6OKK_005

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUA*UUAUG*CAAAG

Length

13 nucleotides

Bulged bases

6OKK|1|A|U|1183, 6OKK|1|A|A|1194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OKK|1|A|C|1106
6OKK|1|A|U|1107
6OKK|1|A|A|1108
*
6OKK|1|A|U|1180
6OKK|1|A|U|1181
6OKK|1|A|A|1182
6OKK|1|A|U|1183
6OKK|1|A|G|1184
*
6OKK|1|A|C|1191
6OKK|1|A|A|1192
6OKK|1|A|A|1193
6OKK|1|A|A|1194
6OKK|1|A|G|1195

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein SA

Chain G

40S ribosomal protein S5

Chain K

40S ribosomal protein S15A

Chain Z

40S ribosomal protein S21

Chain c

40S ribosomal protein S26