J3_6OKK_008
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6OKK|1|A|G|1300, 6OKK|1|A|G|1302, 6OKK|1|A|A|1304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0953
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6OKK|1|A|C|1281
6OKK|1|A|U|1282
6OKK|1|A|U|1283
6OKK|1|A|A|1284
6OKK|1|A|A|1285
6OKK|1|A|U|1286
6OKK|1|A|U|1287
6OKK|1|A|U|1288
*
6OKK|1|A|G|1299
6OKK|1|A|G|1300
6OKK|1|A|G|1301
6OKK|1|A|G|1302
6OKK|1|A|A|1303
6OKK|1|A|A|1304
6OKK|1|A|A|1305
6OKK|1|A|C|1306
6OKK|1|A|U|1307
6OKK|1|A|C|1308
6OKK|1|A|A|1309
6OKK|1|A|C|1310
*
6OKK|1|A|G|1700
6OKK|1|A|G|1701
6OKK|1|A|C|1702
6OKK|1|A|U|1703
6OKK|1|A|G|1704
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain N
- 40S ribosomal protein S20e
- Chain S
- 40S ribosomal protein S18
- Chain T
- 40S ribosomal protein S29
- Chain X
- 40S ribosomal protein S19
Coloring options: