J3_6OKK_014
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAAA*UUUUC*GUAAUC
- Length
- 16 nucleotides
- Bulged bases
- 6OKK|1|A|A|1812
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OKK|1|A|G|1734
6OKK|1|A|U|1735
6OKK|1|A|A|1741
6OKK|1|A|A|1742
6OKK|1|A|A|1743
*
6OKK|1|A|U|1786
6OKK|1|A|U|1787
6OKK|1|A|U|1788
6OKK|1|A|U|1789
6OKK|1|A|C|1790
*
6OKK|1|A|G|1809
6OKK|1|A|U|1810
6OKK|1|A|A|1811
6OKK|1|A|A|1812
6OKK|1|A|U|1813
6OKK|1|A|C|1814
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain M
- 40S ribosomal protein S16
- Chain N
- 40S ribosomal protein S20e
- Chain O
- 40S ribosomal protein S10
- Chain T
- 40S ribosomal protein S29
- Chain X
- 40S ribosomal protein S19
- Chain Y
- 40S ribosomal protein S19
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