J3_6OKK_016
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6OKK|1|A|U|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_016 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1192
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.6
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OKK|1|A|U|640
6OKK|1|A|G|641
6OKK|1|A|A|642
*
6OKK|1|A|U|929
6OKK|1|A|A|930
6OKK|1|A|A|931
6OKK|1|A|U|932
6OKK|1|A|A|933
6OKK|1|A|G|934
*
6OKK|1|A|C|1031
6OKK|1|A|A|1032
6OKK|1|A|U|1033
6OKK|1|A|U|1034
6OKK|1|A|A|1035
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S7
- Chain K
- 40S ribosomal protein S15A
- Chain Q
- 40S ribosomal protein S23
- Chain U
- 40S ribosomal protein S15
- Chain V
- 40S ribosomal protein S11
- Chain d
- 40S ribosomal protein S27
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