J3_6OKK_019
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUAAUUGG*CGCGCGGGUCUCAUAAUCCCGAGGUCG*UCCUCACAUU
- Length
- 46 nucleotides
- Bulged bases
- 6OKK|1|g|U|32, 6OKK|1|g|A|45
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OKK|1|g|G|2
6OKK|1|g|G|3
6OKK|1|g|U|4
6OKK|1|g|A|5
6OKK|1|g|A|6
6OKK|1|g|U|7
6OKK|1|g|U|8
6OKK|1|g|G|9
6OKK|1|g|G|10
*
6OKK|1|g|C|24
6OKK|1|g|G|25
6OKK|1|g|C|26
6OKK|1|g|G|27
6OKK|1|g|C|28
6OKK|1|g|G|29
6OKK|1|g|G|30
6OKK|1|g|G|31
6OKK|1|g|U|32
6OKK|1|g|C|33
6OKK|1|g|U|34
6OKK|1|g|C|35
6OKK|1|g|A|36
6OKK|1|g|U|37
6OKK|1|g|A|38
6OKK|1|g|A|39
6OKK|1|g|U|40
6OKK|1|g|C|41
6OKK|1|g|C|42
6OKK|1|g|C|43
6OKK|1|g|G|44
6OKK|1|g|A|45
6OKK|1|g|G|46
6OKK|1|g|G|47
6OKK|1|g|U|48
6OKK|1|g|C|49
6OKK|1|g|G|50
*
6OKK|1|g|U|60
6OKK|1|g|C|61
6OKK|1|g|C|62
6OKK|1|g|U|63
6OKK|1|g|C|64
6OKK|1|g|A|65
6OKK|1|g|C|66
6OKK|1|g|A|67
6OKK|1|g|U|68
6OKK|1|g|U|69
Current chains
- Chain g
- E-site tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 40S ribosomal protein S5
- Chain P
- 40S ribosomal protein S11
- Chain e
- 40S ribosomal protein S28e
Coloring options: