J3_6OLG_020

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CGCAAAUUA*UAGU

Length

15 nucleotides

Bulged bases

6OLG|1|B1|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|B1|A|40
6OLG|1|B1|G|41
*
6OLG|1|B1|C|481
6OLG|1|B1|G|482
6OLG|1|B1|C|483
6OLG|1|B1|A|484
6OLG|1|B1|A|485
6OLG|1|B1|A|486
6OLG|1|B1|U|487
6OLG|1|B1|U|488
6OLG|1|B1|A|489
*
6OLG|1|B1|U|511
6OLG|1|B1|A|512
6OLG|1|B1|G|513
6OLG|1|B1|U|514

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BJ

40S ribosomal protein S9

Chain BX

40S ribosomal protein S23

Chain BY

40S ribosomal protein S24