J3_6OLG_029
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLG_029 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3429
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6OLG|1|B1|U|1340
6OLG|1|B1|C|1341
6OLG|1|B1|U|1342
6OLG|1|B1|U|1343
6OLG|1|B1|A|1344
6OLG|1|B1|G|1345
*
6OLG|1|B1|C|1384
6OLG|1|B1|G|1385
6OLG|1|B1|A|1386
6OLG|1|B1|G|1387
6OLG|1|B1|A|1388
6OLG|1|B1|C|1389
*
6OLG|1|B1|G|1481
6OLG|1|B1|C|1482
6OLG|1|B1|A|1483
6OLG|1|B1|A|1484
6OLG|1|B1|U|1485
6OLG|1|B1|A|1486
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BC
- 40S ribosomal protein S2
- Chain BD
- 40S ribosomal protein S3
- Chain BQ
- 40S ribosomal protein S16
- Chain BR
- 40S ribosomal protein S17
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29
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