Loop J3_6OLG

3D structure

PDB id: 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: CCCAAGUCC*GAGGCCCAGCC*GGACGGUGUGAGGCCGGUAGCG
Length: 42 nucleotides
Bulged bases: 6OLG|1|A2|C|212, 6OLG|1|A2|C|213, 6OLG|1|A2|C|214, 6OLG|1|A2|A|215, 6OLG|1|A2|U|228, 6OLG|1|A2|G|229, 6OLG|1|A2|U|230, 6OLG|1|A2|G|241
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OLG|1|A2|C|191
6OLG|1|A2|C|192
6OLG|1|A2|C|193
6OLG|1|A2|A|194
6OLG|1|A2|A|195
6OLG|1|A2|G|196
6OLG|1|A2|U|197
6OLG|1|A2|C|198
6OLG|1|A2|C|199
*
6OLG|1|A2|G|208
6OLG|1|A2|A|209
6OLG|1|A2|G|210
6OLG|1|A2|G|211
6OLG|1|A2|C|212
6OLG|1|A2|C|213
6OLG|1|A2|C|214
6OLG|1|A2|A|215
6OLG|1|A2|G|216
6OLG|1|A2|C|217
6OLG|1|A2|C|218
*
6OLG|1|A2|G|222
6OLG|1|A2|G|223
6OLG|1|A2|A|224
6OLG|1|A2|C|225
6OLG|1|A2|G|226
6OLG|1|A2|G|227
6OLG|1|A2|U|228
6OLG|1|A2|G|229
6OLG|1|A2|U|230
6OLG|1|A2|G|231
6OLG|1|A2|A|232
6OLG|1|A2|G|233
6OLG|1|A2|G|234
6OLG|1|A2|C|235
6OLG|1|A2|C|236
6OLG|1|A2|G|237
6OLG|1|A2|G|238
6OLG|1|A2|U|239
6OLG|1|A2|A|240
6OLG|1|A2|G|241
6OLG|1|A2|C|242
6OLG|1|A2|G|243

Current chains

Chain A2: 28S ribosomal RNA

Nearby chains

Chain A3: 5.8S ribosomal RNA; 5.8S rRNA
Chain AC: 60S ribosomal protein L4
Chain AY: 60S ribosomal protein L26
Chain Ae: 60S ribosomal protein L32

J3_6OLG_033