J3_6OLG_044

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

6OLG|1|B1|A|226, 6OLG|1|B1|U|227, 6OLG|1|B1|C|228, 6OLG|1|B1|U|286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|B1|C|223
6OLG|1|B1|A|224
6OLG|1|B1|G|225
6OLG|1|B1|A|226
6OLG|1|B1|U|227
6OLG|1|B1|C|228
6OLG|1|B1|A|229
6OLG|1|B1|A|230
6OLG|1|B1|A|231
6OLG|1|B1|A|232
6OLG|1|B1|C|233
6OLG|1|B1|C|234
6OLG|1|B1|A|235
6OLG|1|B1|A|236
6OLG|1|B1|C|237
6OLG|1|B1|C|238
*
6OLG|1|B1|G|283
6OLG|1|B1|C|284
6OLG|1|B1|U|285
6OLG|1|B1|U|286
6OLG|1|B1|U|287
6OLG|1|B1|G|288
*
6OLG|1|B1|C|295
6OLG|1|B1|U|296
6OLG|1|B1|A|297
6OLG|1|B1|G|298

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BG

40S ribosomal protein S6

Chain BI

40S ribosomal protein S8

Chain BL

40S ribosomal protein S11