J3_6OLI_004

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AG*CGC(A2M)AAUUA*UAGU

Length

15 nucleotides

Bulged bases

6OLI|1|S2|C|483, 6OLI|1|S2|U|488

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLI|1|S2|A|40
6OLI|1|S2|G|41
*
6OLI|1|S2|C|481
6OLI|1|S2|G|482
6OLI|1|S2|C|483
6OLI|1|S2|A2M|484
6OLI|1|S2|A|485
6OLI|1|S2|A|486
6OLI|1|S2|U|487
6OLI|1|S2|U|488
6OLI|1|S2|A|489
*
6OLI|1|S2|U|511
6OLI|1|S2|A|512
6OLI|1|S2|G|513
6OLI|1|S2|U|514

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23

Chain SY

40S ribosomal protein S24