J3_6OLI_026

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6OLI|1|t|G|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLI|1|t|A|2530
6OLI|1|t|G|2531
6OLI|1|t|A|2532
6OLI|1|t|U|2533
6OLI|1|t|G|2534
*
6OLI|1|t|C|2551
6OLI|1|t|A|2552
6OLI|1|t|G|2553
6OLI|1|t|U|2554
*
6OLI|1|t|A|2736
6OLI|1|t|G|2737
6OLI|1|t|G|2738
6OLI|1|t|G|2739
6OLI|1|t|U|2740
6OLI|1|t|G|2741
6OLI|1|t|U|2742
6OLI|1|t|A|2743
6OLI|1|t|A|2744
6OLI|1|t|A|2745
6OLI|1|t|U|2746

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27