Loop J3_6OLI

3D structure

PDB id: 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: GGGCCCAAGUCC*GAGGCCCAGCC*GGACGGUGUGAGGCCGGUAGCGGC
Length: 47 nucleotides
Bulged bases: 6OLI|1|t|C|212, 6OLI|1|t|C|213, 6OLI|1|t|U|228, 6OLI|1|t|G|241
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OLI|1|t|G|188
6OLI|1|t|G|189
6OLI|1|t|G|190
6OLI|1|t|C|191
6OLI|1|t|C|192
6OLI|1|t|C|193
6OLI|1|t|A|194
6OLI|1|t|A|195
6OLI|1|t|G|196
6OLI|1|t|U|197
6OLI|1|t|C|198
6OLI|1|t|C|199
*
6OLI|1|t|G|208
6OLI|1|t|A|209
6OLI|1|t|G|210
6OLI|1|t|G|211
6OLI|1|t|C|212
6OLI|1|t|C|213
6OLI|1|t|C|214
6OLI|1|t|A|215
6OLI|1|t|G|216
6OLI|1|t|C|217
6OLI|1|t|C|218
*
6OLI|1|t|G|222
6OLI|1|t|G|223
6OLI|1|t|A|224
6OLI|1|t|C|225
6OLI|1|t|G|226
6OLI|1|t|G|227
6OLI|1|t|U|228
6OLI|1|t|G|229
6OLI|1|t|U|230
6OLI|1|t|G|231
6OLI|1|t|A|232
6OLI|1|t|G|233
6OLI|1|t|G|234
6OLI|1|t|C|235
6OLI|1|t|C|236
6OLI|1|t|G|237
6OLI|1|t|G|238
6OLI|1|t|U|239
6OLI|1|t|A|240
6OLI|1|t|G|241
6OLI|1|t|C|242
6OLI|1|t|G|243
6OLI|1|t|G|244
6OLI|1|t|C|245

Current chains

Chain t: 28S ribosomal RNA

Nearby chains

Chain C: 60S ribosomal protein L4
Chain D: 5.8S ribosomal RNA; 5.8S rRNA
Chain Z: 60S ribosomal protein L26
Chain f: 60S ribosomal protein L32
Chain k: 60S ribosomal protein L37

J3_6OLI_039