J3_6OLZ_044

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

6OLZ|1|B1|A|226, 6OLZ|1|B1|U|227, 6OLZ|1|B1|C|228, 6OLZ|1|B1|A|229, 6OLZ|1|B1|C|284, 6OLZ|1|B1|U|285, 6OLZ|1|B1|U|286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLZ|1|B1|C|223
6OLZ|1|B1|A|224
6OLZ|1|B1|G|225
6OLZ|1|B1|A|226
6OLZ|1|B1|U|227
6OLZ|1|B1|C|228
6OLZ|1|B1|A|229
6OLZ|1|B1|A|230
6OLZ|1|B1|A|231
6OLZ|1|B1|A|232
6OLZ|1|B1|C|233
6OLZ|1|B1|C|234
6OLZ|1|B1|A|235
6OLZ|1|B1|A|236
6OLZ|1|B1|C|237
6OLZ|1|B1|C|238
*
6OLZ|1|B1|G|283
6OLZ|1|B1|C|284
6OLZ|1|B1|U|285
6OLZ|1|B1|U|286
6OLZ|1|B1|U|287
6OLZ|1|B1|G|288
*
6OLZ|1|B1|C|295
6OLZ|1|B1|U|296
6OLZ|1|B1|A|297
6OLZ|1|B1|G|298

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BG

40S ribosomal protein S6

Chain BI

40S ribosomal protein S8

Chain BL

40S ribosomal protein S11