J3_6OM0_028

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

6OM0|1|t|U|4086, 6OM0|1|t|U|4087, 6OM0|1|t|C|4088, 6OM0|1|t|U|4089, 6OM0|1|t|G|4090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OM0_028 not in the Motif Atlas

Homologous match to J3_8C3A_009

Geometric discrepancy: 0.3473

The information below is about J3_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02167.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OM0|1|t|G|4061
6OM0|1|t|G|4062
6OM0|1|t|G|4063
6OM0|1|t|G|4064
*
6OM0|1|t|C|4083
6OM0|1|t|G|4084
6OM0|1|t|C|4085
6OM0|1|t|U|4086
6OM0|1|t|U|4087
6OM0|1|t|C|4088
6OM0|1|t|U|4089
6OM0|1|t|G|4090
6OM0|1|t|G|4091
6OM0|1|t|C|4092
6OM0|1|t|G|4093
6OM0|1|t|C|4094
6OM0|1|t|C|4095
6OM0|1|t|A|4096
6OM0|1|t|A|4097
6OM0|1|t|G|4098
*
6OM0|1|t|C|4117
6OM0|1|t|G|4118
6OM0|1|t|A|4119
6OM0|1|t|C|4120

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain I

60S ribosomal protein L7a

Chain SB

40S ribosomal protein S3a

Chain a

60S ribosomal protein L27

Chain d

60S ribosomal protein L30

Chain h

60S ribosomal protein L34

Chain q

60S ribosomal protein L37a