J3_6OM6_003

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6OM6|1|1|U|686, 6OM6|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OM6_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0838

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6OM6|1|1|U|683
6OM6|1|1|G|684
6OM6|1|1|A|685
6OM6|1|1|U|686
6OM6|1|1|C|687
6OM6|1|1|U|688
6OM6|1|1|A|689
*
6OM6|1|1|U|773
6OM6|1|1|G|774
6OM6|1|1|G|775
*
6OM6|1|1|C|791
6OM6|1|1|A|792
6OM6|1|1|A|793
6OM6|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34