3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OPE_006 not in the Motif Atlas
Homologous match to J3_5J7L_005
Geometric discrepancy: 0.1053
The information below is about J3_5J7L_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6OPE|1|QA|U|943
6OPE|1|QA|G|944
6OPE|1|QA|G|945
6OPE|1|QA|A|946
*
6OPE|1|QA|U|1235
6OPE|1|QA|A|1236
6OPE|1|QA|C|1237
*
6OPE|1|QA|G|1337
6OPE|1|QA|G|1338
6OPE|1|QA|A|1339
6OPE|1|QA|A|1340

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QI
30S ribosomal protein S9
Chain QM
30S ribosomal protein S13
Chain QU
30S ribosomal protein Thx
Chain QV
Transfer RNA; tRNA

Coloring options:


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