J3_6OPE_011

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_011 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1584

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OPE|1|QA|U|1073
6OPE|1|QA|G|1074
*
6OPE|1|QA|U|1083
6OPE|1|QA|G|1084
6OPE|1|QA|U|1085
6OPE|1|QA|U|1086
6OPE|1|QA|G|1087
*
6OPE|1|QA|C|1098
6OPE|1|QA|G|1099
6OPE|1|QA|C|1100
6OPE|1|QA|A|1101
6OPE|1|QA|A|1102

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QE

30S ribosomal protein S5