J3_6OPE_021

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6OPE|1|RA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_021 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0867

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6OPE|1|RA|C|1306
6OPE|1|RA|A|1307
6OPE|1|RA|A|1308
6OPE|1|RA|G|1309
*
6OPE|1|RA|C|1605
6OPE|1|RA|G|1606
6OPE|1|RA|C|1607
6OPE|1|RA|A|1608
6OPE|1|RA|A|1609
6OPE|1|RA|A|1610
6OPE|1|RA|C|1611
*
6OPE|1|RA|G|1620
6OPE|1|RA|U|1621
6OPE|1|RA|G|1622

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34