3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
6OPE|1|XA|A|975, 6OPE|1|XA|G|976, 6OPE|1|XA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OPE_036 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0917
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OPE|1|XA|U|955
6OPE|1|XA|U|956
6OPE|1|XA|U|957
6OPE|1|XA|A|958
6OPE|1|XA|A|959
6OPE|1|XA|U|960
6OPE|1|XA|U|961
6OPE|1|XA|C|962
*
6OPE|1|XA|G|973
6OPE|1|XA|A|974
6OPE|1|XA|A|975
6OPE|1|XA|G|976
6OPE|1|XA|A|977
6OPE|1|XA|A|978
6OPE|1|XA|C|979
6OPE|1|XA|C|980
6OPE|1|XA|U|981
6OPE|1|XA|U|982
6OPE|1|XA|A|983
6OPE|1|XA|C|984
*
6OPE|1|XA|G|1221
6OPE|1|XA|G|1222
6OPE|1|XA|C|1223
6OPE|1|XA|G|1224
6OPE|1|XA|A|1225

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XJ
30S ribosomal protein S10
Chain XM
30S ribosomal protein S13
Chain XN
30S ribosomal protein S14 type Z
Chain XS
30S ribosomal protein S19
Chain XY
Transfer RNA; tRNA

Coloring options:


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