J3_6OPE_046

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6OPE|1|YA|G|686, 6OPE|1|YA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_046 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0921

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6OPE|1|YA|C|683
6OPE|1|YA|G|684
6OPE|1|YA|A|685
6OPE|1|YA|G|686
6OPE|1|YA|C|687
6OPE|1|YA|U|688
6OPE|1|YA|A|689
*
6OPE|1|YA|U|773
6OPE|1|YA|A|774
6OPE|1|YA|G|775
*
6OPE|1|YA|C|791
6OPE|1|YA|G|792
6OPE|1|YA|A|793
6OPE|1|YA|G|794

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YD

50S ribosomal protein L2