J3_6OPE_077

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

6OPE|1|YA|A|2388, 6OPE|1|YA|U|2390, 6OPE|1|YA|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_077 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0937

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6OPE|1|YA|G|2282
6OPE|1|YA|C|2283
6OPE|1|YA|C|2284
*
6OPE|1|YA|G|2384
6OPE|1|YA|C|2385
6OPE|1|YA|C|2386
6OPE|1|YA|U|2387
6OPE|1|YA|A|2388
6OPE|1|YA|G|2389
6OPE|1|YA|U|2390
6OPE|1|YA|G|2391
6OPE|1|YA|A|2392
6OPE|1|YA|A|2393
6OPE|1|YA|C|2394
6OPE|1|YA|C|2395
*
6OPE|1|YA|G|2421
6OPE|1|YA|A|2422
6OPE|1|YA|U|2423
6OPE|1|YA|C|2424
6OPE|1|YA|A|2425
6OPE|1|YA|A|2426
6OPE|1|YA|C|2427

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain Y1

50S ribosomal protein L28

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15