J3_6ORD_020

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6ORD|1|RA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORD_020 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0763

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6ORD|1|RA|C|1306
6ORD|1|RA|A|1307
6ORD|1|RA|A|1308
6ORD|1|RA|G|1309
*
6ORD|1|RA|C|1605
6ORD|1|RA|G|1606
6ORD|1|RA|C|1607
6ORD|1|RA|A|1608
6ORD|1|RA|A|1609
6ORD|1|RA|A|1610
6ORD|1|RA|C|1611
*
6ORD|1|RA|G|1620
6ORD|1|RA|U|1621
6ORD|1|RA|G|1622

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34