J3_6ORD_043
3D structure
- PDB id
- 6ORD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 6ORD|1|YA|U|273|||B
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ORD_043 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.0838
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ORD|1|YA|U|269
6ORD|1|YA|A|270
6ORD|1|YA|A|271
6ORD|1|YA|A|272|||A
6ORD|1|YA|C|272|||B
*
6ORD|1|YA|G|272|||V
6ORD|1|YA|G|272|||W
6ORD|1|YA|G|272|||X
6ORD|1|YA|U|272|||Y
6ORD|1|YA|C|272|||Z
6ORD|1|YA|G|273|||A
6ORD|1|YA|U|273|||B
6ORD|1|YA|G|273|||C
*
6ORD|1|YA|C|366
6ORD|1|YA|G|370
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YI
- 50S ribosomal protein L9
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