J3_6ORL_017

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORL_017 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1144

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6ORL|1|2|U|943
6ORL|1|2|G|944
6ORL|1|2|G|945
6ORL|1|2|A|946
*
6ORL|1|2|U|1235
6ORL|1|2|A|1236
6ORL|1|2|C|1237
*
6ORL|1|2|G|1337
6ORL|1|2|G|1338
6ORL|1|2|A|1339
6ORL|1|2|A|1340

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

30S ribosomal protein S9

Chain r

30S ribosomal protein S13