J3_6OSI_013

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6OSI|1|RA|U|271|||D

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSI_013 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1625

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6OSI|1|RA|U|269
6OSI|1|RA|A|270|||A
6OSI|1|RA|A|270|||B
6OSI|1|RA|A|270|||C
6OSI|1|RA|C|270|||D
*
6OSI|1|RA|G|270|||X
6OSI|1|RA|G|270|||Y
6OSI|1|RA|G|270|||Z
6OSI|1|RA|U|271|||A
6OSI|1|RA|C|271|||B
6OSI|1|RA|G|271|||C
6OSI|1|RA|U|271|||D
6OSI|1|RA|G|271|||E
*
6OSI|1|RA|C|366
6OSI|1|RA|G|370

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28