J3_6OSI_014

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6OSI|1|RA|G|686, 6OSI|1|RA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSI_014 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1062

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

6OSI|1|RA|C|683
6OSI|1|RA|G|684
6OSI|1|RA|A|685
6OSI|1|RA|G|686
6OSI|1|RA|C|687
6OSI|1|RA|U|688
6OSI|1|RA|A|689
*
6OSI|1|RA|U|773
6OSI|1|RA|A|774
6OSI|1|RA|G|775
*
6OSI|1|RA|C|791
6OSI|1|RA|G|792
6OSI|1|RA|A|793
6OSI|1|RA|G|794

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2