J3_6OSI_043

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6OSI|1|YA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSI_043 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1072

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6OSI|1|YA|C|1306
6OSI|1|YA|A|1307
6OSI|1|YA|A|1308
6OSI|1|YA|G|1309
*
6OSI|1|YA|C|1605
6OSI|1|YA|G|1606
6OSI|1|YA|C|1607
6OSI|1|YA|A|1608
6OSI|1|YA|A|1609
6OSI|1|YA|A|1610
6OSI|1|YA|C|1611
*
6OSI|1|YA|G|1620
6OSI|1|YA|U|1621
6OSI|1|YA|G|1622

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34