J3_6OSK_016

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSK_016 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.136

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6OSK|1|2|U|943
6OSK|1|2|G|944
6OSK|1|2|G|945
6OSK|1|2|A|946
*
6OSK|1|2|U|1235
6OSK|1|2|A|1236
6OSK|1|2|C|1237
*
6OSK|1|2|G|1337
6OSK|1|2|G|1338
6OSK|1|2|A|1339
6OSK|1|2|A|1340

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

30S ribosomal protein S9

Chain r

30S ribosomal protein S13