3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
6OSK|1|1|U|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OSK_027 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.0683
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6OSK|1|1|G|297
6OSK|1|1|G|298
6OSK|1|1|A|299
6OSK|1|1|A|300
6OSK|1|1|G|301
*
6OSK|1|1|C|316
6OSK|1|1|G|317
6OSK|1|1|C|318
6OSK|1|1|G|319
6OSK|1|1|A|320
6OSK|1|1|U|321
6OSK|1|1|A|322
6OSK|1|1|C|323
6OSK|1|1|A|324
6OSK|1|1|G|325
*
6OSK|1|1|C|337
6OSK|1|1|G|338
6OSK|1|1|U|339
6OSK|1|1|A|340
6OSK|1|1|C|341

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


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