J3_6OSK_038

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6OSK|1|1|U|686, 6OSK|1|1|A|792, 6OSK|1|1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSK_038 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0934

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6OSK|1|1|U|683
6OSK|1|1|G|684
6OSK|1|1|A|685
6OSK|1|1|U|686
6OSK|1|1|C|687
6OSK|1|1|U|688
6OSK|1|1|A|689
*
6OSK|1|1|U|773
6OSK|1|1|G|774
6OSK|1|1|G|775
*
6OSK|1|1|C|791
6OSK|1|1|A|792
6OSK|1|1|A|793
6OSK|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34