J3_6OT3_002

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6OT3|1|1|U|686, 6OT3|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OT3_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1086

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6OT3|1|1|U|683
6OT3|1|1|G|684
6OT3|1|1|A|685
6OT3|1|1|U|686
6OT3|1|1|C|687
6OT3|1|1|U|688
6OT3|1|1|A|689
*
6OT3|1|1|U|773
6OT3|1|1|G|774
6OT3|1|1|G|775
*
6OT3|1|1|C|791
6OT3|1|1|A|792
6OT3|1|1|A|793
6OT3|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34