3D structure

PDB id
6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound Release complex 70S at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUG*CUAACG*CGGACAG
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OT3_007 not in the Motif Atlas
Homologous match to J3_4WF9_007
Geometric discrepancy: 0.1825
The information below is about J3_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07703.1
Basepair signature
cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

6OT3|1|1|C|2091
6OT3|1|1|U|2092
6OT3|1|1|G|2093
*
6OT3|1|1|C|2196
6OT3|1|1|U|2197
6OT3|1|1|A|2198
6OT3|1|1|A|2199
6OT3|1|1|C|2200
6OT3|1|1|G|2201
*
6OT3|1|1|C|2222
6OT3|1|1|G|2223
6OT3|1|1|G|2224
6OT3|1|1|A|2225
6OT3|1|1|C|2226
6OT3|1|1|A|2227
6OT3|1|1|G|2228

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain G
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

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