J3_6OT3_029

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6OT3|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OT3_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0942

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OT3|1|1|G|297
6OT3|1|1|G|298
6OT3|1|1|A|299
6OT3|1|1|A|300
6OT3|1|1|G|301
*
6OT3|1|1|C|316
6OT3|1|1|G|317
6OT3|1|1|C|318
6OT3|1|1|G|319
6OT3|1|1|A|320
6OT3|1|1|U|321
6OT3|1|1|A|322
6OT3|1|1|C|323
6OT3|1|1|A|324
6OT3|1|1|G|325
*
6OT3|1|1|C|337
6OT3|1|1|G|338
6OT3|1|1|U|339
6OT3|1|1|A|340
6OT3|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24