J3_6OTR_017
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 6OTR|1|RA|G|686, 6OTR|1|RA|G|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OTR_017 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.0771
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6OTR|1|RA|C|683
6OTR|1|RA|G|684
6OTR|1|RA|A|685
6OTR|1|RA|G|686
6OTR|1|RA|C|687
6OTR|1|RA|U|688
6OTR|1|RA|A|689
*
6OTR|1|RA|U|773
6OTR|1|RA|A|774
6OTR|1|RA|G|775
*
6OTR|1|RA|C|791
6OTR|1|RA|G|792
6OTR|1|RA|A|793
6OTR|1|RA|G|794
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
- Chain RD
- 50S ribosomal protein L2
Coloring options: