J3_6OTR_054

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CACG*CGGUAAG*CGAGG

Length

16 nucleotides

Bulged bases

6OTR|1|YA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OTR|1|YA|C|2789
6OTR|1|YA|A|2790
6OTR|1|YA|C|2791
6OTR|1|YA|G|2792
*
6OTR|1|YA|C|2804
6OTR|1|YA|G|2805
6OTR|1|YA|G|2807
6OTR|1|YA|U|2808
6OTR|1|YA|A|2809
6OTR|1|YA|A|2810
6OTR|1|YA|G|2811
*
6OTR|1|YA|C|2889
6OTR|1|YA|G|2891
6OTR|1|YA|A|2892
6OTR|1|YA|G|2893
6OTR|1|YA|G|2894

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3