J3_6OTR_055
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 6OTR|1|YA|G|2833, 6OTR|1|YA|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OTR_055 not in the Motif Atlas
- Homologous match to J3_7RQB_014
- Geometric discrepancy: 0.1018
- The information below is about J3_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95952.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OTR|1|YA|C|2814
6OTR|1|YA|C|2815
*
6OTR|1|YA|G|2831
6OTR|1|YA|U|2832
6OTR|1|YA|G|2833
6OTR|1|YA|G|2834
6OTR|1|YA|A|2835
6OTR|1|YA|U|2836
*
6OTR|1|YA|A|2882
6OTR|1|YA|A|2883
6OTR|1|YA|U|2884
6OTR|1|YA|C|2885
6OTR|1|YA|G|2886
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YE
- 50S ribosomal protein L3
- Chain YR
- 50S ribosomal protein L17
- Chain YT
- 50S ribosomal protein L19
Coloring options: