J3_6OTR_077
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6OTR|1|YA|A|2388, 6OTR|1|YA|U|2390, 6OTR|1|YA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OTR_077 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1011
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6OTR|1|YA|G|2282
6OTR|1|YA|C|2283
6OTR|1|YA|C|2284
*
6OTR|1|YA|G|2384
6OTR|1|YA|C|2385
6OTR|1|YA|C|2386
6OTR|1|YA|U|2387
6OTR|1|YA|A|2388
6OTR|1|YA|G|2389
6OTR|1|YA|U|2390
6OTR|1|YA|G|2391
6OTR|1|YA|A|2392
6OTR|1|YA|A|2393
6OTR|1|YA|C|2394
6OTR|1|YA|C|2395
*
6OTR|1|YA|G|2421
6OTR|1|YA|A|2422
6OTR|1|YA|U|2423
6OTR|1|YA|C|2424
6OTR|1|YA|A|2425
6OTR|1|YA|A|2426
6OTR|1|YA|C|2427
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XW
- Transfer RNA; tRNA
- Chain Y0
- 50S ribosomal protein L27
- Chain Y1
- 50S ribosomal protein L28
- Chain Y6
- 50S ribosomal protein L33
- Chain Y8
- 50S ribosomal protein L35
- Chain YP
- 50S ribosomal protein L15
Coloring options: