J3_6OUO_002

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6OUO|1|1|U|686, 6OUO|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OUO_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1086

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6OUO|1|1|U|683
6OUO|1|1|G|684
6OUO|1|1|A|685
6OUO|1|1|U|686
6OUO|1|1|C|687
6OUO|1|1|U|688
6OUO|1|1|A|689
*
6OUO|1|1|U|773
6OUO|1|1|G|774
6OUO|1|1|G|775
*
6OUO|1|1|C|791
6OUO|1|1|A|792
6OUO|1|1|A|793
6OUO|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34